squidpy1.6.2
squidpy1.6.2
Published
Spatial Single Cell Analysis in Python
pip install squidpy
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Project URLs
Requires Python
>=3.10
Dependencies
- aiohttp
>=3.8.1
- anndata
>=0.9
- cycler
>=0.11.0
- dask-image
>=0.5.0
- dask
[array]>=2021.02.0
- docrep
>=0.3.1
- fsspec
>=2021.11.0
- leidenalg
>=0.8.2
- matplotlib-scalebar
>=0.8.0
- matplotlib
>=3.3
- networkx
>=2.6.0
- numba
>=0.56.4
- numpy
>=1.23.0
- omnipath
>=1.0.7
- pandas
>=2.1.0
- pillow
>=8.0.0
- scanpy
>=1.9.3
- scikit-image
>=0.20
- scikit-learn
>=0.24.0
- spatialdata
>=0.2.5
- statsmodels
>=0.12.0
- tifffile
!=2022.4.22
- tqdm
>=4.50.2
- validators
>=0.18.2
- xarray
<2024.10.0,>=0.16.1
- zarr
>=2.6.1
- pre-commit
>=3.0.0; extra == "dev"
- tox
>=4.0.0; extra == "dev"
- ipython
; extra == "docs"
- ipywidgets
>=8.0.0; extra == "docs"
- myst-nb
>=0.17.1; extra == "docs"
- nbsphinx
>=0.8.1; extra == "docs"
- sphinx-autodoc-annotation
; extra == "docs"
- sphinx-autodoc-typehints
>=1.10.3; extra == "docs"
- sphinx-copybutton
>=0.5.0; extra == "docs"
- sphinx-rtd-theme
; extra == "docs"
- sphinx
>=5.3; extra == "docs"
- sphinxcontrib-bibtex
>=2.3.0; extra == "docs"
- sphinxcontrib-spelling
>=7.6.2; extra == "docs"
- coverage
[toml]>=7; extra == "test"
- pytest-cov
>=4; extra == "test"
- pytest-mock
>=3.5.0; extra == "test"
- pytest-xdist
>=3; extra == "test"
- pytest
>=7; extra == "test"